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I have the code and need some modification using new technique.
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Additional Project Description:
01/08/2013 at 11:02 EST
this project is about bioinformatics.. multiple sequence alignment.. need a way to find the conserve block of multiple sequence by utilize the pairwise alignment of them.
the step as as follows:
input is N sequence
make n(n-1)/n pairwise alignment 2 pair every time.
collect all the aligned pairs
extend them to construct a column.
from column build the all possible block or conserved blocks, or region.
use optimization method to find the best solution.
01/09/2013 at 2:49 EST
after doing sequential part also do the same project but in parallel way using MPI, openMP or Cuda GPU.