offline
Last seen: Jan 09, 2014 2:03 AM EST
Hire Me!
Rate: $20.00 USD/hour
Follow Invite to Project
 

lexeyka

MS in mathematics

Username: lexeyka

  • Has not made a deposit.
  • Has verified their email address.
  • Has completed their profile.
  • Has not verified their secure phone number.
  • Verified
  • Payment is verified.

Location: Saint Petersburg, Russian Federation

Member since: November 2013

Reputation:

0.0/5

(0 reviews)

0
[see more]

No user has recommended this freelancer.

My skills:

My projects:

    lexeyka has not completed any projects.
    lexeyka has not completed any projects.
    lexeyka does not have any work in progress.
    lexeyka has not bid on any projects.
    lexeyka does not have any open projects.
    lexeyka does not have any work in progress.
[see more]

Portfolio

[see more]

Résumé

Experience

Researcher/Software Engineer

Jun 2011 - Sep 2013 (2 years)

Algorithmic Biology Laboratory

Developing SPAdes genome assembler http://bioinf.spbau.ru/en/spades, which was<br />one of the first genome assemblers, specified for single-cell bacterial data. Duties particularly included preparing current release using C++, also optimizing time and memory consumption.<br />In addition a set of tools for an assembly quality assessment was developed using Java and Python.

Education

MS in mathematics

Sankt-Peterburgskij Gosudarstvennyj Universitet

2008-2013

Publications

Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. A

Journal of Computational Biology

The lion's share of bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced using existing technologies. A major goal of single-cell genomics is to complement gene-centric metagenomic data with whole-genome assemblies of uncultivated organisms. Assembly of single-cell data is challenging because of highly non-uniform read coverage as well as elevated levels of sequencing errors and chimeric reads. We describe SPAdes, a new assembler for both single-cell and standard

Nikolay Vyahhi, Alexey Pyshkin, Son K. Pham, Pavel Pevzner. From de Bruijn Graphs to Rectangle Graphs for Genome Assembly, Lecture Notes in Bioinformatics 7534 (2012), pp. 249-261. doi:10.1007/978-3-642-33122-0_20

Lecture Notes in Computer Science

Jigsaw puzzles were originally constructed by painting a picture on a rectangular piece of wood and further cutting it into smaller pieces with a jigsaw. The Jigsaw Puzzle Problem is to find an arrangement of these pieces that fills up the rectangle in such a way that neighboring pieces have “matching” boundaries with respect to color and texture. While the general Jigsaw Puzzle Problem is NP-complete [6], we discuss its simpler version (called Rectangle Puzzle Problem) and study the rectangle graphs, recen