Biopython seqrecord jobs
I need help building 6 gene trees. I need 6 clean, clear, phylogenetic trees built for all 6 genes. The phylogenetic relationship in the end trees should be clear and make sense. For each tree, I need notes about the tree production like removal of specific sequences, branches, alignments, trimming etc. so the data is reproducible. - here is a zip of sequen...that's alright. They just need to have the stop codons (aka. the full protein) - RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. Its major strength is a fast maximum likelihood tree search algorithm that returns trees with good likelihood scores. - I use Linux and biopython interchangeably Thank you.
I need help building 6 gene trees. I need 6 clean, clear, phylogenetic trees built for all 6 genes. The phylogenetic relationship in the end trees should be clear and make sense. For each tree, I need notes about the tree production like removal of specific sequences, branches, alignments, trimming etc. so the data is reproducible. - here is a zip of sequence...that's alright. They just need to have the stop codons (aka. the full protein) - RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. Its major strength is a fast maximum likelihood tree search algorithm that returns trees with good likelihood scores. - I use Linux and biopython interchangeably Thank you.
My max budget is $50 and should be completed in 2 days. All required files are attached. I will provide 2 .gbf and 2 .gff files for reference. ,,,example2.gff. I have written a python script with input file , I got output of (its not complete correct, this output should be exactly match with ) Task is to create a new python script or modify file to generate correct output. Task should take multiple .gbf files as input and generate corresponding .gff files.
If you a python expert, and if you have experience in biology please contact me. Otherwise, don't waist my time.
Dears, I need assistance regarding Bioconductor and Biopython. Only serious bidders welcome.
If you are expert in python, biopython, ubuntu, then tip. Otherwise, please don't waist my time.
Can be discussed through DM. Having some confidential details.
Looking forward to someone who has some experience with Python and Biopython. I have a finished website with a python backend. Translate the code from screenshots into the correct file so the website works with python. Some css components might be missing, they are all available online. This should not take that long to complete. Requires Python 2.7 and Biopython. Thank you.
i want complete web application with script in java or python by using biojava or biopython in which biological formats convert into other option file upload and copy paste in input time and output time download option and output too.. complete script and all files include script must include different functions for all formats links i want this formats.. Input formats and Available output formats are listed below. Fasta :converted into pir,phylip,genbank,seqxml. Fastq: converted into fasta, pir, genbank, phylip, qual. PIR :converted into fasta, phylip, genbank, seqxml. Phylip: converted into fasta, genbank, pir. PDB: converted into fasta,pir,phylip and genbank GenBank: converted into fasta, phylip, pir, seqxml. Seqxml
Neural network for bioinformatics in python (biopython, sklearn) I need urgent help with a neural network programming project in python for bioinformatics. Everything is outlined in the attached files. I attached some resources for learning the bioinformatics background for the problem. There are two parts. Part A has specific instructions and must be completed in 4 days from now maximum, I'm willing to pay 80$ for it. If you can ONLY do part A let me know, I may still interested. Part B is open-ended. If doing both parts A and B, they must be done in 6 days maximum from now, I'm willing to pay 180$ total. Results of part A still have to be provided in 4 days.
Given a set of DNA sequences, find a set of l-mers, one from each sequence, that maximizes the consensus score. Input: A t×n matrix of DNA, and l , the length of the pattern to find. Output: An array of t starting positions s = (s1 , s2 , . . . , st ) maximizing Score(s, DNA). There is also other tasks in the pdf attached. I need help to sort this out as I don't understand much about biology and my python level is very low/
I need a software/application which can take genomic data as input and can produce some valuable stats (example: certain disease, SNP's etc). I need to use google genomic cloud or aws genomic cloud. Let me know if you can help me. I just want a very basic and simple app.
Hi brainwind, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a biopython project I need completed. Thanks
Hi jiefoxi, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a biopython project I need help with and was hoping you would be interested. thanks
Hi juliusjuod, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a biopython project I need completed, I was hoping you could help me. Thanks
Hi Markreyn, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I need help with a biopython project. Thanks
Hi vlarin, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I need help with a biopython project, thanks.
Hi Arkabrata, I noticed your profile and would like to offer you my project. We can discuss any details over chat.I have a biopython project I require help with. Thanks
Hi bd100m, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a biopython project I was hoping you could help me with
Hi cooktorrin, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a biopython project I was hoping you could help me with
Hi DanielRed, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a biopython project I was hoping you could help me with
Hi maum1971, I noticed your profile and would like to offer you my project. We can discuss any details over chat. i have a biopython project I was hoping you could help me with.
Hi suyashdhoot, I noticed your profile and would like to offer you my project. We can discuss any details over chat.i have a biopython project I was hoping you could help me with.
Hi narumeena, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I have a simple biopython project I was hoping you could work with me on. thanks
Hi sunilnagpaliitd, I noticed your profile and would like to offer you my project. We can discuss any details over chat. i have a biopython project I was hoping you could help me with.
Hi johnfidel98, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I was wondering if you had experience in biopython, or would be able to write some python scripts to analyse a dna sequence for a project for me. thanks.
Hi ebin123456, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I was wondering if you had experience in biopython and would be interested in doing a simple biopython project for me. thanks
Hi devgeek0, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I was wanting to hire you for a simple biopython project, I need some python scripts to analyse a DNA sequence. It should be very simple for an experienced programmer. I have quite a short deadline and was wondering if you were available for hire.
Hi hellenski, I noticed your profile and would like to offer you my project. We can discuss any details over chat. I was wondering if you had any experience using biopython or if you would be able to use python to analyse a script of DNA for me. Thanks!
Biopython programming. Familiarity with genbank is essential. Compatible work hours, ie. available at least some of the time during UTC 9am-5pm
The program should be written using python 2.7 (cannot import any biopython modules) and need to provide comments as much as possible.rnThere are four files given - , , , rnf1 has genonme sequences, f2 has annotations. f1 and f2 have sequence id in common which need to be matched. Then the output needs to be written to a file with proteinid from f2 and squence from f1, using a condition.rnNext we use files f3 and f5. -- Read the sequence from f5 three characters at a time and replace with one matching character from f3, using a condition. The ouput is written to file rnNext we use files f4 and f6 -- Read each character in the sequence in f6 and find its index value in f4. Find the gravy value for each sequence = Sum all the character
Need help with Biopython, Bioconductor, NCBI ,Stat and MATH. More in PM> Thanks. ----------------------------------------------------------------------------------------------------------
Hello - help need with Biopython Bioconductor Blast . Few tutor hours per week I guess. More in PM> chance for future opportunity.
Hello All, We need a skilled person in : Genome and disease pattern research, alignment, DNA research. Needed skills in : R> BLAST/FASTA > BioPython, online knowledge need in statistics too. Happy bidding
ask for ID search data file according to ID save results records in file corresponding to that id Do alignment using Biopython library and save the alignment results in different file. Do tree construction using records file and save the results into a file. Show alignment and/or tree results if requested from user. And provide the ability to save the results in a file.
Please see attached questions and let me know if you can be of assistance. I am working in python 3.4.1
Biopython/python project Pipeline: Basic Python File Manipulation and BioPython: Seq Object (15 Marks) A DNA sequence has been provided in a file called nucleotide_sequence.txt. a) Open and read the contents of the text files. Print this sequence to the screen. 3 Marks b) Create a DNA Seq object using the sequence that was read from the file in part a. 4 Marks c) Translate this nucleotide sequence to a protein sequence called protein_sequence. 8 Marks BioPython: BLAST Record Manipulation and Visualisation The sequence from Q1 must be identified as follows (A BLAST UML diagram has been provided for your reference): (55 marks) a) Run a BLAST on the unidentified protein sequence and save the results as an xml file called betp.xml. 5 Marks b) Open the BLAS...
