Re-Provision Godaddy Dedicated Server

I current host three dating websites on a GoDaddy dedicated server. The SSH binary was compromised and now I need to re-provision the server and make sure that the websites are up and running after re-provisioning. Based on my understanding of the process, the server will need to be backed-up, GoDaddy will re-provision, and then my websites and database will need to be re-installed and configured to operate as they are working today. I would also like to have the software examined to insure there are no more compromised files. ## Deliverables Websites need to function as they do right now, which includes cron jobs, email, and all other processes and functionality.