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A simple python script (preferably bioinformatics)

$10-30 USD

Completed
Posted over 1 year ago

$10-30 USD

Paid on delivery
I need a Python script to compare two input files that will look like the [login to view URL] and [login to view URL] to produce an [login to view URL] file. Step 1: - First, delete each odd line in an input file, creating a stack of lines, where each line contains only these letters: A, G, C, T and -: For example, if an input file contains four lines: >Blablabla1 ATTA- >Blablabla2 TTT-T Then the output will look like: ATTA- TTT-T - Second, go letter by letter and calculate the content for column In our example, the stack of lines: ATTA- TTT-T Will be transformed into this table: Position, A(%), T(%), G(%), C(%), -(%) 1, 50, 50, 0, 0, 0 2, 0, 100, 0, 0, 0 3, 0, 100, 0, 0, 0 4, 50, 0, 0, 0, 50 5, 0, 50, 0, 0, 50 Step 2: When both input files are converted into their corresponding “content tables”, the script should subtract one of these tables from another to create a “difference content table”. For example, if the first content table looks like this: Position, A(%), T(%), G(%), C(%), -(%) 1, 50, 50, 0, 0, 0 2, 0, 100, 0, 0, 0 And the second one looks like this, Position, A(%), T(%), G(%), C(%), -(%) 1, 50, 50, 0, 0, 0 2, 0, 50, 0, 50, 0 Then, the resulting table will look like this: Position, A(%), T(%), G(%), C(%), -(%) 1, 0, 0, 0, 0, 0 2, 0, 50, 0, -50, 0 This resulting table should be saved as a [login to view URL] file. Hope this is clear
Project ID: 35359469

About the project

11 proposals
Remote project
Active 1 yr ago

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This seems like a simple data processing + file reading/writing task. I’ve worked on similar projects before but not on bioinformatics. I have experience in Python and Matlab, you can check my github below: [login to view URL] Although I am not a bioinformatician, I took a couple of courses in Molecular Biology, so I have some basic understanding on such subjects. Feel free to contact me to discuss details.
$18 USD in 7 days
0.0 (0 reviews)
0.0
0.0
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Hi there, I'm a Pharmacist and a Python programmer. I understand you need a python script that would: Input: Two files TO-DO: Calculate Consensus sequence which is the percentage of each nucleotide for each position for each file TO-DO: Subtract Consensus sequence of the two files Output: [login to view URL](a table format with six columns) I have a 1+ year of experience in python programming and i worked in similar automation projects I'm very enthusiastic and ready to begin immediately would be happy to chat more. Kind Regards, Mohamed M
$10 USD in 3 days
0.0 (0 reviews)
0.0
0.0
11 freelancers are bidding on average $33 USD for this job
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Hello, I hope this finds you well. I have just seen your project requiring; Python Data Visualization I believe that my 10-year experience in this field is what you need right away. Avoid the headache of looking further. Let's save time and focus on the real task. My proposed timelines and budget are just placeholder and an open for negotiation to increase or decrease as per the full requirements at hand. Allow me to prove how better my review can be. Smile all the way! Click the message button, so initiate the conversation. Regards, Fridah
$120 USD in 3 days
4.2 (16 reviews)
5.7
5.7
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✅✅✅ Full Experiences in Python and Visualization ✅✅✅ Hi, Dear! I read your requirement carefully. I can do your work perfectly. I can start Your work right now... Hope to discuss with you soon. Thanks & Best regards! https://www.freelancer.com/u/torrikress2
$20 USD in 1 day
5.0 (14 reviews)
4.9
4.9
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Expert HERE!!! Thanks for you job post! I just done a project such as yours so I can satisfy you perfectly with my skills and experiences. If you hire me, then you will never regret and I will do my best. I hope see you soon Thanks again ............... ........... ........ ...... ... .
$20 USD in 7 days
5.0 (15 reviews)
4.2
4.2
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Hi I have read your description carefully. ⭐ I have rich experiences in Python, Machine learning, AI, Deep learning, Image processing. ⭐ I worked on many similar projects. I can guarantee the quality of the job. Please kindly message me. Thank you.
$20 USD in 1 day
4.9 (6 reviews)
3.9
3.9
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Greetings! Thanks for your job posting. I read your project details and i understood all. I can help you with your project at a high level! I have rich experience in Python developing. My skills and experience is a great match for your needs. I can start right now. Looking forward to hearing from you. Best regards. thanks.
$50 USD in 3 days
5.0 (2 reviews)
1.8
1.8
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Hello, I have read and understood the basics and prompts of this task. Given a chance, I will deliver a masterpiece. My experience in this field and completed orders allow me to work on this assignment efficiently. Kindly give me the confidence to work on and complete this task. I will deliver a bug free code and further changes will be free. It will be my pleasure to work with you. Regards
$30 USD in 2 days
0.0 (0 reviews)
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About the client

Flag of UNITED STATES
New Haven, United States
5.0
64
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Member since Sep 3, 2015

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